species:   Rhsol
pid:       PID0601
parent:    Rhi-milR-16
paralog:   
locus:     KB317702.1:243369-243464
matures:   ['AGACCGUCCACUCUGAACUAGCG', 'CUGAGAUAGAGCAGGGCGAAUAC']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317702.1:243369-243464

23 out of bounds
1596 alignments
7 proper strand
7 stranded perfect matches

          **************************                        **************************          
ACACGAGACUGGCUGAGAUAGAGCAGGGCGAAUACCACCAGUAAAAUAAAUAUUGCGGUCCGUAGACCGUCCACUCUGAACUAGCGUGUCAUCCUU
....(((((..((((...(((((..(((((..(((.(((.((((........)))))))..)))...))))).)))))...))))..))).))...
---------------------------------------------------------------AGACCGUCCACUCUGAACUAGCG---------- l=23 a=0 c
------------CUGAGAUAGAGCAGGGCGAAUAC------------------------------------------------------------- l=23 a=0 c*
--------------------------------------------------------------UAGACCGUCCACUCUGAACUAGCG---------- l=24 a=2 ma
------------CUGAGAUAGAGCAGGGCGAAUACC------------------------------------------------------------ l=24 a=0 ma*

--------------------------------------------------------------UAGACCGUCCACUCUGAACU-------------- l=20 a=1 
--------------------------------------------------------------UAGACCGUCCACUCUGAACUA------------- l=21 a=1 
--------------------------------------------------------------UAGACCGUCCACUCUGAACUAG------------ l=22 a=1 
--------------------------------------------------------------UAGACCGUCCACUCUGAACUAGC----------- l=23 a=1 
--------------------------------------------------------------UAGACCGUCCACUCUGAACUAGCG---------- l=24 a=2 (ma)
----------------------------------------------UAAAUAUUGCGGUCCGUAGACC---------------------------- l=22 a=1 

mb-01011
ax-1001011
ku-01
ss-101111001100
fn-001
